IL_8URI_164

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8URI|1|a|U|2131, 8URI|1|a|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URI_164 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3001

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8URI|1|a|C|2129
8URI|1|a|U|2130
8URI|1|a|U|2131
8URI|1|a|U|2132
8URI|1|a|G|2133
8URI|1|a|A|2134
8URI|1|a|A|2135
8URI|1|a|G|2136
*
8URI|1|a|U|2155
8URI|1|a|G|2156
8URI|1|a|G|2157
8URI|1|a|A|2158
8URI|1|a|G|2159

Current chains

Chain a

23S rRNA

Nearby chains