IL_8URI_168

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AGG*CACU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URI_168 not in the Motif Atlas

Homologous match to IL_5J7L_335

Geometric discrepancy: 0.1

The information below is about IL_5J7L_335

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URI|1|a|A|2453
8URI|1|a|G|2454
8URI|1|a|G|2455
*
8URI|1|a|C|2496
8URI|1|a|A|2497
8URI|1|a|C|2499
8URI|1|a|U|2500

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain v

50S ribosomal protein L16