IL_8URI_204

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URI_204 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3944

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8URI|1|a|G|875
8URI|1|a|C|876
8URI|1|a|A|877
8URI|1|a|A|878
8URI|1|a|G|879
8URI|1|a|G|880
*
8URI|1|a|C|897
8URI|1|a|C|898
8URI|1|a|A|899
8URI|1|a|A|900
8URI|1|a|C|901
8URI|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain v

50S ribosomal protein L16