IL_8URM_047

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

8URM|1|1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_047 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.2064

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8URM|1|1|C|1319
8URM|1|1|C|1320
8URM|1|1|A|1321
8URM|1|1|A|1322
8URM|1|1|C|1323
*
8URM|1|1|G|1331
8URM|1|1|G|1332
8URM|1|1|G|1333

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22