IL_8URM_056

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_056 not in the Motif Atlas

Geometric match to IL_5J7L_300

Geometric discrepancy: 0.2156

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8URM|1|1|U|1474
8URM|1|1|G|1475
8URM|1|1|U|1476
8URM|1|1|A|1477
8URM|1|1|G|1478
*
8URM|1|1|U|1513
8URM|1|1|G|1514
8URM|1|1|A|1515
8URM|1|1|G|1516
8URM|1|1|G|1517

Current chains

Chain 1

13S ribosomal RNA

Nearby chains