3D structure

PDB id
8URM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGAGG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URM_067 not in the Motif Atlas
Geometric match to IL_5J7L_310
Geometric discrepancy: 0.1292
The information below is about IL_5J7L_310
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

8URM|1|1|U|1720
8URM|1|1|G|1721
8URM|1|1|A|1722
8URM|1|1|G|1723
8URM|1|1|G|1724
*
8URM|1|1|U|1736
8URM|1|1|G|1737
8URM|1|1|G|1738
8URM|1|1|A|1739
8URM|1|1|G|1740

Current chains

Chain 1
13S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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