IL_8URM_067

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_067 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.1292

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8URM|1|1|U|1720
8URM|1|1|G|1721
8URM|1|1|A|1722
8URM|1|1|G|1723
8URM|1|1|G|1724
*
8URM|1|1|U|1736
8URM|1|1|G|1737
8URM|1|1|G|1738
8URM|1|1|A|1739
8URM|1|1|G|1740

Current chains

Chain 1

13S ribosomal RNA

Nearby chains