IL_8URM_073

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_073 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.12

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8URM|1|1|U|1851
8URM|1|1|U|1852
8URM|1|1|A|1853
8URM|1|1|A|1854
8URM|1|1|U|1855
8URM|1|1|U|1856
8URM|1|1|G|1857
8URM|1|1|A|1858
8URM|1|1|U|1859
8URM|1|1|G|1860
*
8URM|1|1|U|1882
8URM|1|1|U|1883
8URM|1|1|G|1884
8URM|1|1|A|1885
8URM|1|1|U|1886
8URM|1|1|C|1887
8URM|1|1|G|1888
8URM|1|1|A|1889
8URM|1|1|A|1890
8URM|1|1|G|1891

Current chains

Chain 1

13S ribosomal RNA

Nearby chains