3D structure

PDB id
8URM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAAA(5MU)UCCUUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
8URM|1|1|A|1938, 8URM|1|1|U|1944
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8URM|1|1|C|1934
8URM|1|1|G|1935
8URM|1|1|A|1936
8URM|1|1|A|1937
8URM|1|1|A|1938
8URM|1|1|5MU|1939
8URM|1|1|U|1940
8URM|1|1|C|1941
8URM|1|1|C|1942
8URM|1|1|U|1943
8URM|1|1|U|1944
8URM|1|1|G|1945
*
8URM|1|1|C|1961
8URM|1|1|5MC|1962
8URM|1|1|U|1963
8URM|1|1|G|1964

Current chains

Chain 1
13S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain 6
Transfer RNA; tRNA
Chain B
50S ribosomal protein L2

Coloring options:

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