3D structure

PDB id
8URM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UG*CAAG
Length
6 nucleotides
Bulged bases
8URM|1|1|A|2542
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URM_099 not in the Motif Atlas
Geometric match to IL_5J7L_342
Geometric discrepancy: 0.0917
The information below is about IL_5J7L_342
Detailed Annotation
Major groove platform with intercalation
Broad Annotation
Major groove platform
Motif group
IL_02555.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
9

Unit IDs

8URM|1|1|U|2522
8URM|1|1|G|2523
*
8URM|1|1|C|2540
8URM|1|1|A|2541
8URM|1|1|A|2542
8URM|1|1|G|2543

Current chains

Chain 1
13S ribosomal RNA

Nearby chains

Chain J
Large ribosomal subunit protein uL13
Chain f
50S ribosomal protein L36

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3051 s