IL_8URM_125

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8URM|1|2|U|244, 8URM|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_125 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.1132

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8URM|1|2|G|242
8URM|1|2|A|243
8URM|1|2|U|244
8URM|1|2|U|245
8URM|1|2|A|246
8URM|1|2|G|247
*
8URM|1|2|C|277
8URM|1|2|G|278
8URM|1|2|A|279
8URM|1|2|C|280
8URM|1|2|G|281
8URM|1|2|A|282
8URM|1|2|U|283
8URM|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain v

Small ribosomal subunit protein uS17