IL_8URM_142

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8URM|1|2|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_142 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.1021

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8URM|1|2|U|662
8URM|1|2|A|663
8URM|1|2|G|664
8URM|1|2|A|665
8URM|1|2|G|666
*
8URM|1|2|U|740
8URM|1|2|G|741
8URM|1|2|G|742
8URM|1|2|A|743

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S6

Chain t

Small ribosomal subunit protein uS15

Chain w

30S ribosomal protein S18