IL_8URM_150

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8URM|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_150 not in the Motif Atlas

Geometric match to IL_4LFB_037

Geometric discrepancy: 0.1297

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8URM|1|2|G|933
8URM|1|2|C|934
8URM|1|2|A|935
*
8URM|1|2|U|1380
8URM|1|2|U|1381
8URM|1|2|C|1382
8URM|1|2|C|1383
8URM|1|2|C|1384

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain l

Small ribosomal subunit protein uS7

Chain n

Small ribosomal subunit protein uS9