IL_8URM_160

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

8URM|1|2|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_160 not in the Motif Atlas

Geometric match to IL_5J7L_051

Geometric discrepancy: 0.1563

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

8URM|1|2|G|1124
8URM|1|2|U|1125
8URM|1|2|U|1126
8URM|1|2|G|1127
8URM|1|2|C|1128
*
8URM|1|2|G|1144
8URM|1|2|A|1145
8URM|1|2|A|1146
8URM|1|2|C|1147
8URM|1|2|U|1148
8URM|1|2|C|1149

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS9

Chain o

Small ribosomal subunit protein uS10