IL_8UT0_002

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UCU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_002 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.1094

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8UT0|1|2|U|35
8UT0|1|2|C|36
8UT0|1|2|U|37
*
8UT0|1|2|A|471
8UT0|1|2|U|472
8UT0|1|2|A|473

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A