IL_8UT0_011

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8UT0|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_011 not in the Motif Atlas

Homologous match to IL_8P9A_383

Geometric discrepancy: 0.1818

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8UT0|1|2|G|143
8UT0|1|2|U|144
8UT0|1|2|A|145
8UT0|1|2|U|146
8UT0|1|2|A|147
8UT0|1|2|A|148
8UT0|1|2|C|149
*
8UT0|1|2|G|165
8UT0|1|2|C|166
8UT0|1|2|U|167
8UT0|1|2|A|168
8UT0|1|2|A|169
8UT0|1|2|U|170
8UT0|1|2|A|171
8UT0|1|2|C|172

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S6-A

Chain Sd

40S ribosomal protein S24-A