3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
GUAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
8UT0|1|2|U|170
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_011 not in the Motif Atlas
Homologous match to IL_8P9A_383
Geometric discrepancy: 0.1818
The information below is about IL_8P9A_383
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

8UT0|1|2|G|143
8UT0|1|2|U|144
8UT0|1|2|A|145
8UT0|1|2|U|146
8UT0|1|2|A|147
8UT0|1|2|A|148
8UT0|1|2|C|149
*
8UT0|1|2|G|165
8UT0|1|2|C|166
8UT0|1|2|U|167
8UT0|1|2|A|168
8UT0|1|2|A|169
8UT0|1|2|U|170
8UT0|1|2|A|171
8UT0|1|2|C|172

Current chains

Chain 2
18S rRNA

Nearby chains

Chain ST
40S ribosomal protein S6-A
Chain Sd
40S ribosomal protein S24-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3396 s