IL_8UT0_013

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CGACC*GGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_013 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3534

The information below is about IL_4WFL_001

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8UT0|1|2|C|186
8UT0|1|2|G|187
8UT0|1|2|A|188
8UT0|1|2|C|189
8UT0|1|2|C|190
*
8UT0|1|2|G|195
8UT0|1|2|G|196
8UT0|1|2|A|197
8UT0|1|2|A|198
8UT0|1|2|G|199

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SV

40S ribosomal protein S8-A