IL_8UT0_028

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

8UT0|1|2|A|541, 8UT0|1|2|A|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_028 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3076

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8UT0|1|2|G|514
8UT0|1|2|A|515
8UT0|1|2|G|516
*
8UT0|1|2|C|536
8UT0|1|2|G|537
8UT0|1|2|A|538
8UT0|1|2|G|539
8UT0|1|2|G|540
8UT0|1|2|A|541
8UT0|1|2|A|542
8UT0|1|2|C|543

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sg

40S ribosomal protein S30-A