IL_8UT0_032

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8UT0|1|2|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_032 not in the Motif Atlas

Homologous match to IL_8P9A_403

Geometric discrepancy: 0.1532

The information below is about IL_8P9A_403

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8UT0|1|2|G|557
8UT0|1|2|U|558
8UT0|1|2|C|559
*
8UT0|1|2|G|586
8UT0|1|2|C|587

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S3

Chain Sg

40S ribosomal protein S30-A