IL_8UT0_034

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8UT0|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_034 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1176

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8UT0|1|2|G|616
8UT0|1|2|U|617
8UT0|1|2|U|618
8UT0|1|2|A|619
8UT0|1|2|A|620
8UT0|1|2|A|621
8UT0|1|2|A|622
*
8UT0|1|2|U|1104
8UT0|1|2|C|1105

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Sc

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S26-B