3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UGG*CCA
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_042 not in the Motif Atlas
Geometric match to IL_4V88_405
Geometric discrepancy: 0.1962
The information below is about IL_4V88_405
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.1
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
48

Unit IDs

8UT0|1|2|U|822
8UT0|1|2|G|823
8UT0|1|2|G|824
*
8UT0|1|2|C|848
8UT0|1|2|C|849
8UT0|1|2|A|850

Current chains

Chain 2
18S rRNA

Nearby chains

Chain LT
60S ribosomal protein L19-A
Chain SX
40S ribosomal protein S11-A

Coloring options:


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