IL_8UT0_042

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_042 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.1962

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8UT0|1|2|U|822
8UT0|1|2|G|823
8UT0|1|2|G|824
*
8UT0|1|2|C|848
8UT0|1|2|C|849
8UT0|1|2|A|850

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain SX

40S ribosomal protein S11-A