3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CGA*UCUUUGG
Length
10 nucleotides
Bulged bases
8UT0|1|2|C|1096, 8UT0|1|2|U|1098, 8UT0|1|2|G|1100
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_051 not in the Motif Atlas
Homologous match to IL_8C3A_443
Geometric discrepancy: 0.1347
The information below is about IL_8C3A_443
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47729.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8UT0|1|2|C|1034
8UT0|1|2|G|1035
8UT0|1|2|A|1036
*
8UT0|1|2|U|1095
8UT0|1|2|C|1096
8UT0|1|2|U|1097
8UT0|1|2|U|1098
8UT0|1|2|U|1099
8UT0|1|2|G|1100
8UT0|1|2|G|1101

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SR
40S ribosomal protein S2
Chain SX
40S ribosomal protein S11-A
Chain SY
40S ribosomal protein S13
Chain Sa
40S ribosomal protein S21-A
Chain Sb
40S ribosomal protein S22-A
Chain Sc
40S ribosomal protein S23-A
Chain Sf
40S ribosomal protein S27-A

Coloring options:


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