3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UU*AGUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_099 not in the Motif Atlas
Geometric match to IL_4LFB_024
Geometric discrepancy: 0.272
The information below is about IL_4LFB_024
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

8UT0|1|A|U|177
8UT0|1|A|U|178
*
8UT0|1|A|A|238
8UT0|1|A|G|239
8UT0|1|A|U|240
8UT0|1|A|G|241

Current chains

Chain A
25S rRNA

Nearby chains

Chain LN
60S ribosomal protein L13-A
Chain Lj
60S ribosomal protein L35-A
Chain Ll
60S ribosomal protein L37-A

Coloring options:


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