IL_8UT0_099

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_099 not in the Motif Atlas

Geometric match to IL_4LFB_024

Geometric discrepancy: 0.272

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8UT0|1|A|U|177
8UT0|1|A|U|178
*
8UT0|1|A|A|238
8UT0|1|A|G|239
8UT0|1|A|U|240
8UT0|1|A|G|241

Current chains

Chain A

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain Lj

60S ribosomal protein L35-A

Chain Ll

60S ribosomal protein L37-A