IL_8UT0_101

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

8UT0|1|A|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_101 not in the Motif Atlas

Homologous match to IL_8P9A_242

Geometric discrepancy: 0.1137

The information below is about IL_8P9A_242

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8UT0|1|A|G|337
8UT0|1|A|A|338
8UT0|1|A|C|339
*
8UT0|1|C|G|25
8UT0|1|C|U|26

Current chains

Chain A

25S rRNA

Chain C

5.8S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A