IL_8UT0_107

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8UT0|1|A|U|534, 8UT0|1|A|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_107 not in the Motif Atlas

Homologous match to IL_8P9A_248

Geometric discrepancy: 0.0965

The information below is about IL_8P9A_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8UT0|1|A|G|531
8UT0|1|A|A|532
8UT0|1|A|A|533
8UT0|1|A|U|534
8UT0|1|A|G|535
8UT0|1|A|U|536
8UT0|1|A|A|537
8UT0|1|A|G|538
*
8UT0|1|A|U|553
8UT0|1|A|A|554
8UT0|1|A|U|555
8UT0|1|A|U|556
8UT0|1|A|A|557
8UT0|1|A|U|558
8UT0|1|A|A|559
8UT0|1|A|G|560
8UT0|1|A|C|561

Current chains

Chain A

25S rRNA

Nearby chains

Chain LO

60S ribosomal protein L14-A

Chain LU

60S ribosomal protein L20-A