IL_8UT0_113

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_113 not in the Motif Atlas

Homologous match to IL_8P9A_254

Geometric discrepancy: 0.1344

The information below is about IL_8P9A_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8UT0|1|A|C|758
8UT0|1|A|U|759
8UT0|1|A|G|760
8UT0|1|A|A|761
8UT0|1|A|U|762
8UT0|1|A|G|763
*
8UT0|1|A|C|768
8UT0|1|A|G|769
8UT0|1|A|G|770
8UT0|1|A|A|771
8UT0|1|A|U|772
8UT0|1|A|G|773

Current chains

Chain A

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain Lc

60S ribosomal protein L28

Chain Lq

60S ribosomal protein L42-A