IL_8UT0_143

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

8UT0|1|A|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_143 not in the Motif Atlas

Homologous match to IL_8P9A_286

Geometric discrepancy: 0.0705

The information below is about IL_8P9A_286

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8UT0|1|A|C|1385
8UT0|1|A|A|1386
8UT0|1|A|G|1387
*
8UT0|1|A|C|1420
8UT0|1|A|G|1421

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain LH

60S ribosomal protein L6-B

Chain Lg

60S ribosomal protein L32