3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UCAAC*GGA
Length
8 nucleotides
Bulged bases
8UT0|1|A|G|1514
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_147 not in the Motif Atlas
Homologous match to IL_8P9A_290
Geometric discrepancy: 0.1188
The information below is about IL_8P9A_290
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.11
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
19

Unit IDs

8UT0|1|A|U|1501
8UT0|1|A|C|1502
8UT0|1|A|A|1503
8UT0|1|A|A|1504
8UT0|1|A|C|1505
*
8UT0|1|A|G|1513
8UT0|1|A|G|1514
8UT0|1|A|A|1515

Current chains

Chain A
25S rRNA

Nearby chains

Chain LR
60S ribosomal protein L17-A
Chain LT
60S ribosomal protein L19-A
Chain Ln
60S ribosomal protein L39
Chain z
Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag)

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.195 s