IL_8UT0_162

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_162 not in the Motif Atlas

Homologous match to IL_8P9A_303

Geometric discrepancy: 0.1173

The information below is about IL_8P9A_303

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67095.2

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

8UT0|1|A|A|1895
8UT0|1|A|A|1896
8UT0|1|A|G|1897
*
8UT0|1|A|C|2338
8UT0|1|A|C|2339
8UT0|1|A|U|2340

Current chains

Chain A

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LX

60S ribosomal protein L23-A

Chain LY

60S ribosomal protein L24-A