3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CUGAAUG*CGCG
Length
11 nucleotides
Bulged bases
8UT0|1|A|U|2209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UT0|1|A|C|2204
8UT0|1|A|U|2205
8UT0|1|A|G|2206
8UT0|1|A|A|2207
8UT0|1|A|A|2208
8UT0|1|A|U|2209
8UT0|1|A|G|2210
*
8UT0|1|A|C|2235
8UT0|1|A|G|2236
8UT0|1|A|C|2237
8UT0|1|A|G|2238

Current chains

Chain A
25S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain E
60S ribosomal protein L1
Chain LD
60S ribosomal protein L2-A
Chain Ls
Translation factor eIF5A
Chain SQ
40S ribosomal protein S1-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1179 s