IL_8UT0_173

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

8UT0|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UT0|1|A|C|2204
8UT0|1|A|U|2205
8UT0|1|A|G|2206
8UT0|1|A|A|2207
8UT0|1|A|A|2208
8UT0|1|A|U|2209
8UT0|1|A|G|2210
*
8UT0|1|A|C|2235
8UT0|1|A|G|2236
8UT0|1|A|C|2237
8UT0|1|A|G|2238

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain E

60S ribosomal protein L1

Chain LD

60S ribosomal protein L2-A

Chain Ls

Translation factor eIF5A

Chain SQ

40S ribosomal protein S1-A