3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
GC*GCAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_175 not in the Motif Atlas
Geometric match to IL_8C3A_094
Geometric discrepancy: 0.0972
The information below is about IL_8C3A_094
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22551.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

8UT0|1|A|G|2276
8UT0|1|A|C|2277
*
8UT0|1|A|G|2307
8UT0|1|A|C|2308
8UT0|1|A|A|2309
8UT0|1|A|U|2310

Current chains

Chain A
25S rRNA

Nearby chains

Chain Lp
60S ribosomal protein L41-A
Chain n
Transfer RNA; tRNA

Coloring options:


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