IL_8UT0_175

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_175 not in the Motif Atlas

Geometric match to IL_8C3A_094

Geometric discrepancy: 0.0972

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8UT0|1|A|G|2276
8UT0|1|A|C|2277
*
8UT0|1|A|G|2307
8UT0|1|A|C|2308
8UT0|1|A|A|2309
8UT0|1|A|U|2310

Current chains

Chain A

25S rRNA

Nearby chains

Chain Lp

60S ribosomal protein L41-A

Chain n

Transfer RNA; tRNA