IL_8UT0_181

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8UT0|1|A|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_181 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0993

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8UT0|1|A|U|2423
8UT0|1|A|A|2424
8UT0|1|A|G|2425
*
8UT0|1|A|U|2604
8UT0|1|A|G|2605
8UT0|1|A|G|2606
8UT0|1|A|G|2607

Current chains

Chain A

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain LP

60S ribosomal protein L15-A

Chain Lq

60S ribosomal protein L42-A