IL_8UT0_192
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UT0_192 not in the Motif Atlas
- Homologous match to IL_8P9A_333
- Geometric discrepancy: 0.1157
- The information below is about IL_8P9A_333
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8UT0|1|A|U|2835
8UT0|1|A|C|2836
8UT0|1|A|A|2837
8UT0|1|A|A|2838
8UT0|1|A|G|2839
*
8UT0|1|A|C|2849
8UT0|1|A|G|2850
8UT0|1|A|A|2851
8UT0|1|A|C|2852
8UT0|1|A|A|2853
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L10
- Chain Lo
- 60S ribosomal protein L40-A
- Chain m
- Transfer RNA; tRNA
Coloring options: