3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CG*UGG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_193 not in the Motif Atlas
Homologous match to IL_8P9A_334
Geometric discrepancy: 0.099
The information below is about IL_8P9A_334
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07039.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

8UT0|1|A|C|2876
8UT0|1|A|G|2877
*
8UT0|1|A|U|2949
8UT0|1|A|G|2950
8UT0|1|A|G|2951

Current chains

Chain A
25S rRNA

Nearby chains

Chain LE
60S ribosomal protein L3
Chain m
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3312 s