IL_8UT0_198

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

8UT0|1|A|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_198 not in the Motif Atlas

Homologous match to IL_8P9A_339

Geometric discrepancy: 0.1201

The information below is about IL_8P9A_339

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8UT0|1|A|U|2891
8UT0|1|A|A|2892
*
8UT0|1|A|U|2909
8UT0|1|A|A|2910
8UT0|1|A|A|2911
8UT0|1|A|G|2912

Current chains

Chain A

25S rRNA

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain LQ

60S ribosomal protein L16-A

Chain Lo

60S ribosomal protein L40-A