3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
8UT0|1|A|A|2971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_200 not in the Motif Atlas
Geometric match to IL_5TBW_060
Geometric discrepancy: 0.3183
The information below is about IL_5TBW_060
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

8UT0|1|A|C|2960
8UT0|1|A|G|2961
*
8UT0|1|A|C|2970
8UT0|1|A|A|2971
8UT0|1|A|G|2972

Current chains

Chain A
25S rRNA

Nearby chains

Chain LD
60S ribosomal protein L2-A
Chain LL
60S ribosomal protein L10
Chain Ls
Translation factor eIF5A
Chain m
Transfer RNA; tRNA
Chain n
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1199 s