3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CUUAGUAC*GGAACAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_203 not in the Motif Atlas
Homologous match to IL_8P9A_344
Geometric discrepancy: 0.0945
The information below is about IL_8P9A_344
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8UT0|1|A|C|3018
8UT0|1|A|U|3019
8UT0|1|A|U|3020
8UT0|1|A|A|3021
8UT0|1|A|G|3022
8UT0|1|A|U|3023
8UT0|1|A|A|3024
8UT0|1|A|C|3025
*
8UT0|1|A|G|3030
8UT0|1|A|G|3031
8UT0|1|A|A|3032
8UT0|1|A|A|3033
8UT0|1|A|C|3034
8UT0|1|A|A|3035
8UT0|1|A|G|3036

Current chains

Chain A
25S rRNA

Nearby chains

Chain LE
60S ribosomal protein L3
Chain LK
60S ribosomal protein L9-A
Chain LX
60S ribosomal protein L23-A
Chain Lo
60S ribosomal protein L40-A

Coloring options:


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