IL_8UTI_020

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_020 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.094

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8UTI|1|A|G|725
8UTI|1|A|G|726
8UTI|1|A|G|727
8UTI|1|A|G|728
*
8UTI|1|A|U|741
8UTI|1|A|G|742
8UTI|1|A|C|743
8UTI|1|A|A|744
8UTI|1|A|C|745

Current chains

Chain A

25S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18-A

Chain Ld

60S ribosomal protein L29