IL_8UTI_038

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_038 not in the Motif Atlas

Homologous match to IL_8P9A_269

Geometric discrepancy: 0.1119

The information below is about IL_8P9A_269

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8UTI|1|A|A|1006
8UTI|1|A|U|1007
8UTI|1|A|U|1008
8UTI|1|A|A|1009
*
8UTI|1|A|U|1041
8UTI|1|A|U|1042
8UTI|1|A|C|1043
8UTI|1|A|U|1044

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L5

Chain LL

60S ribosomal protein L10

Chain m

Transfer RNA; tRNA