IL_8UTI_095

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_095 not in the Motif Atlas

Homologous match to IL_8P9A_329

Geometric discrepancy: 0.1273

The information below is about IL_8P9A_329

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

8UTI|1|A|G|2823
8UTI|1|A|G|2824
*
8UTI|1|A|U|2865
8UTI|1|A|U|2866
8UTI|1|A|C|2867

Current chains

Chain A

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LL

60S ribosomal protein L10

Chain Ld

60S ribosomal protein L29