IL_8UTI_150

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8UTI|1|E|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_150 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.2218

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8UTI|1|E|G|143
8UTI|1|E|U|144
8UTI|1|E|A|145
8UTI|1|E|U|146
8UTI|1|E|A|147
8UTI|1|E|A|148
8UTI|1|E|C|149
*
8UTI|1|E|G|165
8UTI|1|E|C|166
8UTI|1|E|U|167
8UTI|1|E|A|168
8UTI|1|E|A|169
8UTI|1|E|U|170
8UTI|1|E|A|171
8UTI|1|E|C|172

Current chains

Chain E

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S6-A

Chain Sd

40S ribosomal protein S24-A