IL_8UTI_167

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

ACA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_167 not in the Motif Atlas

Homologous match to IL_8C3A_422

Geometric discrepancy: 0.2214

The information below is about IL_8C3A_422

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8UTI|1|E|A|518
8UTI|1|E|C|519
8UTI|1|E|A|520
*
8UTI|1|E|U|532
8UTI|1|E|U|533

Current chains

Chain E

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A