IL_8UTI_170
3D structure
- PDB id
- 8UTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1 and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8UTI|1|E|A|579, 8UTI|1|E|U|581, 8UTI|1|E|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UTI_170 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.2275
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UTI|1|E|G|562
8UTI|1|E|U|563
8UTI|1|E|G|564
8UTI|1|E|C|565
8UTI|1|E|C|566
8UTI|1|E|A|567
8UTI|1|E|G|568
*
8UTI|1|E|C|575
8UTI|1|E|G|576
8UTI|1|E|G|577
8UTI|1|E|U|578
8UTI|1|E|A|579
8UTI|1|E|A|580
8UTI|1|E|U|581
8UTI|1|E|U|582
8UTI|1|E|C|583
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain D
- Messenger RNA (5'-R(P*AP*AP*UP*AP*AP*UP*GP*AP*AP*AP*A)-3')
- Chain SA
- 40S ribosomal protein S3
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sg
- 40S ribosomal protein S30-A
- Chain m
- Transfer RNA; tRNA
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