IL_8UTI_182

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_182 not in the Motif Atlas

Homologous match to IL_8P9A_419

Geometric discrepancy: 0.0901

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8UTI|1|E|G|871
8UTI|1|E|G|872
8UTI|1|E|U|873
8UTI|1|E|C|874
*
8UTI|1|E|G|953
8UTI|1|E|G|954
8UTI|1|E|A|955
8UTI|1|E|C|956

Current chains

Chain E

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S1-A

Chain SY

40S ribosomal protein S13

Chain Sf

40S ribosomal protein S27-A