IL_8UTI_187
3D structure
- PDB id
- 8UTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1 and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UTI_187 not in the Motif Atlas
- Homologous match to IL_8P9A_424
- Geometric discrepancy: 0.3143
- The information below is about IL_8P9A_424
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8UTI|1|E|C|990
8UTI|1|E|G|991
8UTI|1|E|A|992
8UTI|1|E|A|993
8UTI|1|E|G|994
*
8UTI|1|E|C|1010
8UTI|1|E|G|1011
8UTI|1|E|U|1012
8UTI|1|E|A|1013
8UTI|1|E|G|1014
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein L2-A
- Chain Lp
- 60S ribosomal protein L41-A
- Chain SZ
- 40S ribosomal protein S14-B
- Chain Se
- 40S ribosomal protein S26-B
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