IL_8UTI_189

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGAU*GCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_189 not in the Motif Atlas

Homologous match to IL_8C3A_444

Geometric discrepancy: 0.1274

The information below is about IL_8C3A_444

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8UTI|1|E|G|1041
8UTI|1|E|G|1042
8UTI|1|E|A|1043
8UTI|1|E|U|1044
*
8UTI|1|E|G|1074
8UTI|1|E|C|1075
8UTI|1|E|A|1076
8UTI|1|E|C|1077

Current chains

Chain E

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S0-A

Chain SQ

40S ribosomal protein S1-A

Chain SY

40S ribosomal protein S13

Chain Se

40S ribosomal protein S26-B