IL_8UTI_218
3D structure
- PDB id
- 8UTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1 and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UTI_218 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.2342
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8UTI|1|E|C|1644
8UTI|1|E|G|1645
8UTI|1|E|C|1646
8UTI|1|E|U|1647
*
8UTI|1|E|A|1753
8UTI|1|E|A|1754
8UTI|1|E|A|1755
8UTI|1|E|A|1756
8UTI|1|E|G|1757
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- Messenger RNA (5'-R(P*AP*AP*UP*AP*AP*UP*GP*AP*AP*AP*A)-3')
- Chain Lp
- 60S ribosomal protein L41-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sg
- 40S ribosomal protein S30-A
- Chain m
- Transfer RNA; tRNA
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