IL_8UTI_224

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_224 not in the Motif Atlas

Homologous match to IL_8P9A_461

Geometric discrepancy: 0.1468

The information below is about IL_8P9A_461

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8UTI|1|E|G|1672
8UTI|1|E|G|1673
8UTI|1|E|C|1674
*
8UTI|1|E|G|1727
8UTI|1|E|A|1728
8UTI|1|E|C|1729

Current chains

Chain E

18S rRNA

Nearby chains

Chain LY

60S ribosomal protein L24-A

Chain ST

40S ribosomal protein S6-A

Chain SV

40S ribosomal protein S8-A