IL_8UTI_226

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_226 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1409

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8UTI|1|E|A|1678
8UTI|1|E|G|1679
8UTI|1|E|G|1680
8UTI|1|E|A|1681
8UTI|1|E|U|1682
*
8UTI|1|E|A|1719
8UTI|1|E|G|1720
8UTI|1|E|A|1721
8UTI|1|E|A|1722
8UTI|1|E|U|1723

Current chains

Chain E

18S rRNA

Nearby chains

Chain LY

60S ribosomal protein L24-A

Chain ST

40S ribosomal protein S6-A

Chain SV

40S ribosomal protein S8-A