IL_8UTJ_044

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACG*CGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTJ_044 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2369

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8UTJ|1|1|G|1168
8UTJ|1|1|A|1169
8UTJ|1|1|C|1170
8UTJ|1|1|G|1171
*
8UTJ|1|1|C|1178
8UTJ|1|1|G|1179
8UTJ|1|1|U|1180
8UTJ|1|1|U|1181

Current chains

Chain 1

23S ribosomal RNA

Nearby chains