IL_8UTJ_139

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8UTJ|1|2|A|532, 8UTJ|1|2|U|534, 8UTJ|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTJ_139 not in the Motif Atlas

Geometric match to IL_8P9A_404

Geometric discrepancy: 0.1525

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8UTJ|1|2|G|515
8UTJ|1|2|PSU|516
8UTJ|1|2|G|517
8UTJ|1|2|C|518
8UTJ|1|2|C|519
8UTJ|1|2|A|520
8UTJ|1|2|G|521
*
8UTJ|1|2|C|528
8UTJ|1|2|G|529
8UTJ|1|2|G|530
8UTJ|1|2|U|531
8UTJ|1|2|A|532
8UTJ|1|2|A|533
8UTJ|1|2|U|534
8UTJ|1|2|A|535
8UTJ|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain i

30S ribosomal protein S4

Chain q

Small ribosomal subunit protein uS12